Upload describe stage outputs 2025-11-11T21:59:19.446877Z

stage2/figure_descriptions.json

@@ -1,5 +1,5 @@
 {
-  "generated_at": "2025-11-11T21:53:16.505777Z",
+  "generated_at": "2025-11-11T21:59:19.446670Z",
   "stage": "describe",
   "prompt": "<image>\nDescribe this image in detail",
   "max_tokens": 512,
@@ -12,21 +12,23 @@
     "retry_backoff_seconds": 2.0,
     "max_retry_wait_seconds": 60.0
   },
-  "figures": [],
-  "failures": [
+  "figures": [
     {
+      "figure_id": "sample_00014_fig01",
       "sample_id": "sample_00014",
       "dataset_index": 14,
-      "figure_id": "sample_00014_fig01",
       "image_path": "sample_00014/figures/sample_00014_fig01.png",
-      "reason": "missing_image"
+      "document_relative_path": "figures/sample_00014_fig01.png",
+      "description": "1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13. 14. 15. 16. 17. 18. 19. 20. 21. 22. 23. 24. 25. 26. 27. 28. 29. 30. 31. 32. 33. 34. 35. 36. 37. 38. 39. 40. 41. 42. 43. 44. 45. 46. 47. 48. 49. 50. 51. 52. 53. 54. 55. 56. 57. 58. 59. 60. 61. 62. 63. 64. 65. 66. 67. 68. 69. 70. 71. 72. 73. 74. 75. 76. 77. 78. 79. 80. 81. 82. 83. 84. 85. 86. 87. 88. 89. 90. 91. 92. 93. 94. 95. 96. 97. 98. 99. 100. 101. 102. 103. 104. 105. 106. 107. 108. 109. 110. 111. 112. 113. 114. 115. 116. 117. 118. 119. 120. 121. 122. 123. 124. 125. 126. 127. 128. 129. 130. 131. 132. 133. 134. 135. 136. 137. 138. 139. 140. 141. 142. 143. 144. 145. 146. 147. 148. 149. 150. 151. 152. 153. 154. 155. 156. 157. 158. 159. 160. 161. 162. 163. 164. 165. 166. 167. 168. 169. 170. 171."
     },
     {
+      "figure_id": "sample_00015_fig01",
       "sample_id": "sample_00015",
       "dataset_index": 15,
-      "figure_id": "sample_00015_fig01",
       "image_path": "sample_00015/figures/sample_00015_fig01.png",
-      "reason": "missing_image"
+      "document_relative_path": "figures/sample_00015_fig01.png",
+      "description": "145 (Fig. 6B), which over-express EGFR (Fig. 6\n\n<table>Surviving FractionA1B1C1D1</table>"
     }
-  ]
+  ],
+  "failures": []
 }

stage2/sample_00014.json

@@ -0,0 +1,13 @@
+{
+  "sample_id": "sample_00014",
+  "figures": [
+    {
+      "figure_id": "sample_00014_fig01",
+      "sample_id": "sample_00014",
+      "dataset_index": 14,
+      "image_path": "sample_00014/figures/sample_00014_fig01.png",
+      "document_relative_path": "figures/sample_00014_fig01.png",
+      "description": "1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13. 14. 15. 16. 17. 18. 19. 20. 21. 22. 23. 24. 25. 26. 27. 28. 29. 30. 31. 32. 33. 34. 35. 36. 37. 38. 39. 40. 41. 42. 43. 44. 45. 46. 47. 48. 49. 50. 51. 52. 53. 54. 55. 56. 57. 58. 59. 60. 61. 62. 63. 64. 65. 66. 67. 68. 69. 70. 71. 72. 73. 74. 75. 76. 77. 78. 79. 80. 81. 82. 83. 84. 85. 86. 87. 88. 89. 90. 91. 92. 93. 94. 95. 96. 97. 98. 99. 100. 101. 102. 103. 104. 105. 106. 107. 108. 109. 110. 111. 112. 113. 114. 115. 116. 117. 118. 119. 120. 121. 122. 123. 124. 125. 126. 127. 128. 129. 130. 131. 132. 133. 134. 135. 136. 137. 138. 139. 140. 141. 142. 143. 144. 145. 146. 147. 148. 149. 150. 151. 152. 153. 154. 155. 156. 157. 158. 159. 160. 161. 162. 163. 164. 165. 166. 167. 168. 169. 170. 171."
+    }
+  ]
+}

stage2/sample_00015.json

@@ -0,0 +1,13 @@
+{
+  "sample_id": "sample_00015",
+  "figures": [
+    {
+      "figure_id": "sample_00015_fig01",
+      "sample_id": "sample_00015",
+      "dataset_index": 15,
+      "image_path": "sample_00015/figures/sample_00015_fig01.png",
+      "document_relative_path": "figures/sample_00015_fig01.png",
+      "description": "145 (Fig. 6B), which over-express EGFR (Fig. 6\n\n<table>Surviving FractionA1B1C1D1</table>"
+    }
+  ]
+}